| Bioinformatics
Softwares Tools |
| WINDOWS |
LINUX |
RasMol
: The best to date 3D program is RasMol, originally developed by Roger
Sayle. To use this program it must first be downloaded onto your computer.
|
Clustal
W 1.81:
Multiple Sequence Alignment Program
[ Clustal W ] |
| JEMBOSS:
Java based GUI for EMBOSS |
EMBOSS
2.8.0 : The European Molecular Biology Open Software Suite. |
| Jemboss-current.zip
|
EMBOSS/EMBOSS-2.8.0
.tar.gz |
| |
EMBOSS-2.8.0-4.gcc.i386.rpm
|
| |
EMBOSS-2.8.0-4.icc.i686.rpm
|
| |
JEMBOSS
2.8.0 : Java based GUI for EMBOSS |
| |
EMBOSS-Jemboss-2.8.0-4.gcc.i386.rpm
|
Clustal
X is a powerful multiple sequence alignment program with a user-friendly
graphical interface. (Windows 95/98)
(543
KB) |
Gibbs
9.95
Gibbs Motif Sampler
[GIBBS ] |
DNATools
6.0 is a comprehensive program package for routine handling and analysis
of nucleotide and protein sequences. The program includes functions for
batch renaming, editing and annotating sequences, restriction mapping,
translation, automated blast search and information retrieval, codon analysis,
primer design and ordering and a lot more...
DNATools only runs on 32bit Windows based PC's *) and it is not possible
to run the program on Macs, Unix and other non-Windows computers
|
MEME/MAST
3.0.4
MEME (motif discovery tool) and MAST (motif search tool)
[ MEME-MAST ] |
Amplify
v1.2 software is for use in designing, analyzing, and simulating experiments
involving the polymerase chain reaction (PCR). Given a template sequence
and two primers, it will predict the possible outputs of the PCR, taking
into account also weak matches to the target sequence.
(260.9
KB) |
NCBI
BLAST 2.2.5
Basic Local Alignment Tool
[ NCBI BLAST ] |
Meta-MEME
is a software toolkit for building and using motif-based hidden Markov models
of DNA and proteins. The input to Meta-MEME is a set of similar protein
sequences, as well as a set of motif models discovered by MEME. Meta-MEME
combines these models into a single, motif-based hidden Markov model and
uses this model to produce a multiple alignment of the original set of sequences
and to search a sequence database for homologs(Platform:sun)
(332.6 KB) |
PHYLIP
3.6a3
Phylogeny Inference Package
-
[ PHYLIP ]
|
pDRAW32(Freeware
DNA cloning, analysis and visualization software.). To run pDRAW32 you need
a PC running Windows 95, 98, ME, NT4, 2000, XP.
. |
Primer3
0.9
PCR primer picking tool
[ Primer3 ] |
PrimerDesign
version 1.10 is a DOS-program to choose primer for PCR or oligonucleotide
probes. It is tailored to check known sequences for repeats and unique sequences
and subsequencly to create prober primers according to this data. A lot
of constrains are available to meet your conditions. It can handle up to
32000 base pairs. Click
here to see help
(234.7 KB) |
QRNA
2.0.1
Prototype non-coding RNA genefinder
[ QRNA ] |
cn3D:
It is an application software used to view 3D structure, sequence, alignment
and powerful annotation of protein.
|
cn3D: It
is an application software used to view 3D structure, sequence, alignment
and powerful annotation of protein.
|
PHYLIP
3.6 Beta Version:
Phylogeny Inference Package |
ReadSeq
1:
Reads and writes nucleic/protein sequences in various formats
[ ReadSeq ] |
iOligo
is a state-of-the-art primer design program. Version/File 1.0
(Demo) |
Sim4:
Program to align cDNA and genomic DNA
[ SIM ] |
TreeView
: Software Tool used to draw a tree diagram with sequence data and binary
data.
|
Wise
2 2.0 : Programs to compare DNA and protein sequences
[ Wise 2 ] |
Chem2Pac
is intended to be a kind of computational chemistry integrator, which has
a multiple document interface, a molecular rendering utility, and allows
the manipulation of various files.
|
Bioperl
1.2.3 : Perl tools for bioinformatics, genomics and life science
research.
[
Bioperl ] |
GeneTree
is an experimental program for comparing gene and species trees. It
is available for both Windows and Apple Macs.Current release is 1.3.0 (4
October 2001) (win95/Nt).
(983KB) |
|
Probe
allows one to evaluate atomic packing, either within or between molecules.
It generates "contact dots" where atoms are in close contact.
(159.6KB) |
|
| MOLMOL
is a molecular graphics program for displaying, analyzing, and manipulating
the three-dimensional structure of biological macromolecules, with special
emphasis on the study of protein or DNA structures determined by NMR.
The program runs on UNIX and Windows NT/95/98/2000 and is freely available.
|
|
RNAdraw:
an integrated program for RNA secondary structure calculation and analysis
under 32-bit Microsoft Windows.
(28.8KB) |
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