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Coconut (Cocos nucifera L.)

DNA Extraction from Coconut Leaves


Plant material

 
  • Collect the spindle leaf lamina from field grown coconut cultivars
  • Store the leaves at 4°C till use.

Extraction Buffer

  • DNA extraction buffer composition of the SDS 1% and CTAB 1%
  • Adjust pH of the buffer to either pH 8.0 or pH 9.
  • Add 0.5% w/ v polyvinylpyrollidone (PVP; insoluble) and 0.2% v/v b - mercaptoethanol just before use.

Procedure

  • Cut 5g leaf lamina into small pieces in a mortar containing liquid nitrogen. Allow the lamina to freeze.
  • Grind the tissue to a fine powder adding liquid nitrogen as and when needed, not allowing the tissue to thaw.
  • Add PVP (0.5%) to the powder and mix it well.
  • Transfer the powdered tissue to 50ml polypropylene tube containing 25 ml extraction buffer.
  • Add 0.2% 0 - mercaptoethanol to the mixture and add CTAB 1%. Mix thoroughly.
  • Incubate the mixture at 65°C for 1 hour with intermittent mixing.
  • Add 15 ml phenolchloroform isoamyl alcohol (25:24:1) and mix gently by swirling the tubes for 10 min.
  • Centrifuge the tubes at 25,000 g for 20 min.
  • Measure and transfer the supernatant to an autoclaved 50ml tubes.
  • Add equal volume of chloroform isoamyl alcohol (24:1) and again mix gently for 15 min.
  • Centrifuge at 25,000g for 10 min and transfer the aqueous phase to a new centrifuge tube.
  • Add 2/3 volume of ice-cold isopropanol and gently mix the tube by inverting it. Incubate at 4°C for 30- 45 min.
  • Pool the precipitated DNA with the help of microtip or glass Pasteur pipettes and transfer to a microfuge tube.
  • Wash the DNA twice with 76% alcohol containing 10 mM ammonium acetate for 30 min.
  • Dry the pellet under vacuum.
  • Dissolve the pellet in 1 ml TE buffer (pH 8.0).

DNA Quantification

  • Quantify the coconut DNA by measuring absorbance at A260, in UV spectrophotometer and take A260/A280 ratio, to evaluate the purity of DNA.
  • Analyse the DNA yield data by computer software MSTATC and estimate DNA molecular weight by agarose electrophoresis on 0.8% agarose and visualise using ethidium bromide staining.

Application

This protocol could also be applied for other palms like arecanut and oil palm.